JWST Calibration Pipeline Testing¶

This is the documentation for calibration-pipeline-testing-tool.

Installation¶

Create a JWST pipeline environment to install into and install pytest-html

conda create -n test_jwst --file http://ssb.stsci.edu/releases/jwstdp/0.7.8/latest-osx
source activate test_jwst
pip install pytest-html

git clone https://github.com/STScI-MESA/calibration-pipeline-testing-tool.git
cd calibration-pipeline-testing-tool
python setup.py install

Basic Usage¶

To setup tests, you specify test input files in a JSON file, with an entry for each step. You do not need to provide input for every step. The below example shows all currently available steps

{
    "dq_init": [
        "dq_init_input.fits"
    ],

    "saturation": [
        "saturation_input.fits"
    ],

    "superbias": [
        "superbias_input.fits"
    ],

    "dark_current": [
        "dark_current_input.fits"
    ],

    "refpix": [
        "refpix_input.fits"
    ],

    "linearity": [
        "linearity_input.fits"
    ],

    "rscd": [
        "rscd_input.fits"
    ],

    "lastframe": [
        "lastframe_input.fits"
    ],

    "jump": [
        "jump_input.fits"
    ],

    "ramp_fit": [
        "ramp_fit_input.fits"
    ]
}

Then from the command line simply run

test_pipeline --config confg.json

This will produce a summary.html file with the test results. Note that this file and the associated plots will be saved in the current directory so it may be useful to run test_pipeline in a new directory.

CALDETECTOR1¶